Getting Started Guide
Installation, license activation, and running your first standardization protocol. Estimated time: 30 minutes.
Getting started
Learn
Documentation, tutorials, and webinars
Everything you need to configure and run Cytely standardization protocols — from first installation to HCS pipeline integration and publication methods templates.
Resources
Learning resources
Webinar Archive
Recorded webinars covering flatfield correction, HCS standardization, and multi-site study design.
Watch webinarsPython SDK Reference
API documentation for the Cytely Python package. Run standardization protocols programmatically from your analysis scripts.
SDK documentationInstrument Protocol Library
Pre-configured standardization protocols for common ZEISS, Leica, Nikon, and Olympus instrument configurations.
Browse protocolsHCS Pipeline Integration Guide
Step-by-step guide for integrating Cytely into CellProfiler and KNIME-based HCS workflows.
Integration guideMethods Section Templates
Ready-to-use methods text for citing Cytely standardization in publications. Includes per-module parameter descriptions.
Methods templatesNeed help with your protocol configuration?
Our application scientists can review your instrument setup and recommend the appropriate flatfield correction and normalization strategy for your specific acquisition workflow.